Small Cell Lung Cancer

El Mehdi Baknine, s194533
Jakob Frostholm Højgaard, s194527
Jonathan Dragestad Møller, s184243
Mikkel Niklas Rasmussen, s193518
Thomas Malthe Mølgaard Tams, s204540

2023-11-28

Introduction

Paper and data source

Title: Comprehensive genomic profiles of small cell lung cancer, George J. et. al. (2015)


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Purpose: Identify different small cell lung cancer profiles

Methods

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Data set overview

Loading

  • Dimensions: 81, 31669

  • 30 metadata

  • 31639 gene expression

Cleaning

  • New dimensions: 81, 31669

  • Check for duplicates in SampleIDs

  • Clean weird variables

  • Check NAs

Augmenting

  • New dimensions: 81, 31772

Overview of metadata

Overview of metadata

Results

PCA

PCA2

Executable Code

Plot1

Some exploratory data analysis

Conclusion